Automated Quantification Pipelines

Automated PM/Vacuole Quantification

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CellQuant is program written in R that automates the quantification of yeast cell PM/vacuole fluorescence.  All source code and installation instructions are available here.

Spot Assay Quantification Pipeline

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The Spot Assay Quantification Pipeline uses CellProfiler to quantify yeast cell colony growth.  All CellProfiler pipeline files, FIJI macro files, and instructional videos can be found here.  In addition, a tool written in R to sort the results of the pipeline is hosted here. 

University of Pittsburgh

 

Room A312 Langley Hall, 

5th & Ruskin
Pittsburgh, PA 15260

 

Phone: 412.648.4289

 

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