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    Automated Quantification Pipelines

    Automated PM/Vacuole Quantification

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    CellQuant is program written in R that automates the quantification of yeast cell PM/vacuole fluorescence.  All source code and installation instructions are available here.

    Spot Assay Quantification Pipeline

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    The Spot Assay Quantification Pipeline uses CellProfiler to quantify yeast cell colony growth.  All CellProfiler pipeline files, FIJI macro files, and instructional videos can be found here.  In addition, a tool written in R to sort the results of the pipeline is hosted here. 

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    University of Pittsburgh

     

    Room A312 Langley Hall, 

    5th & Ruskin
    Pittsburgh, PA 15260

     

    Phone: 412.648.4289

     

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