Automated Quantification Pipelines

Automated PM/Vacuole Quantification


CellQuant is program written in R that automates the quantification of yeast cell PM/vacuole fluorescence.  All source code and installation instructions are available here.

Spot Assay Quantification Pipeline


The Spot Assay Quantification Pipeline uses CellProfiler to quantify yeast cell colony growth.  All CellProfiler pipeline files, FIJI macro files, and instructional videos can be found here.  In addition, a tool written in R to sort the results of the pipeline is hosted here.